rna.MAP
Ribonucleoprotein Complex Map
About
Contributers
Kevin Drew (website)
Anna Mallam (website)
Edward Marcotte (website)
Funding
NIH F32 GM112495, NIH K99 HD092613
Citation
References
- Kramer et al. Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins. Nat Methods. 2014 Oct;11(10):1064-70. doi: 10.1038/nmeth.3092. Epub 2014 Aug 31.
- Conrad et al. Serial interactome capture of the human cell nucleus. Nat Commun. 2016 Apr 4;7:11212. doi: 10.1038/ncomms11212.
- Castello et al. 2016 Comprehensive Identification of RNA-Binding Domains in Human Cells. Mol Cell. 2016 Aug 18;63(4):696-710. doi: 10.1016/j.molcel.2016.06.029. Epub 2016 Jul 21.
- Castello et al. 2012 Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell. 2012 Jun 8;149(6):1393-406. doi: 10.1016/j.cell.2012.04.031. Epub 2012 May 31.
- Beckmann et al. The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs. Nat Commun. 2015 Dec 3;6:10127. doi: 10.1038/ncomms10127.
- Baltz et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol Cell. 2012 Jun 8;46(5):674-90. doi: 10.1016/j.molcel.2012.05.021.
- Bao et al. Capturing the interactome of newly transcribed RNA Nat Methods. 2018 Mar; 15(3): 213–220.
- Huang et al. Transcriptome-wide discovery of coding and noncoding RNA-binding proteins. Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):E3879-E3887. doi: 10.1073/pnas.1718406115. Epub 2018 Apr 10.
- Trendel et al. The Human RNA-Binding Proteome and Its Dynamics During Arsenite-Induced Translational Arrest bioRxiv doi: https://doi.org/10.1101/329995
- Queiroz et al. Unbiased dynamic characterization of RNA-protein interactions by OOPS bioRxiv doi: https://doi.org/10.1101/333336
- Hentze et al. A brave new world of RNA-binding proteins. Nat Rev Mol Cell Biol. 2018 May;19(5):327-341. doi: 10.1038/nrm.2017.130. Epub 2018 Jan 17.
- Kevin Drew, Chanjae Lee, Ryan L Huizar, Fan Tu, Blake Borgeson, Claire D McWhite, Yun Ma, John B Wallingford, Edward M Marcotte Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes. Molecular Systems Biology (2017) 13, 932. DOI 10.15252/msb.20167490
- Ruepp et al. CORUM: the comprehensive resource of mammalian protein complexes--2009. Nucleic Acids Res. 2010 Jan;38(Database issue):D497-501. doi: 10.1093/nar/gkp914. Epub 2009 Nov 1.